io.repseq.seqbase

Class HTTPSequenceResolvers.RAWHTTPResolver

java.lang.Object

io.repseq.seqbase.AbstractRAFastaResolver

io.repseq.seqbase.HTTPFastaSequenceResolver

io.repseq.seqbase.HTTPSequenceResolvers.RAWHTTPResolver

All Implemented Interfaces:

OptionalSequenceResolver, SequenceResolver

Enclosing class:

HTTPSequenceResolvers

public static class HTTPSequenceResolvers.RAWHTTPResolver
extends HTTPFastaSequenceResolver

http://ftp-mouse.sanger.ac.uk/other/jl17/scaffolds.2001.fa#unplaced-7%20233

Field Summary

Fields inherited from class io.repseq.seqbase.HTTPFastaSequenceResolver

CHUNK_SIZE

Constructor Summary

Constructors

Constructor and Description
RAWHTTPResolver(HTTPResolversContext context)

Method Summary

Modifier and Type	Method and Description
boolean	canResolve(SequenceAddress address) Returns true if can resolve such address
protected java.net.URI	resolveHTTPAddress(java.net.URI address) Resolves address to http/https link
protected java.lang.String	resolveRecordId(java.net.URI address) Extracts record name from original address

Methods inherited from class io.repseq.seqbase.HTTPFastaSequenceResolver

ensureCacheDirExist, getCacheDir, getFASTAFile, getReporter, resolveCacheFileName, resolveReaderId

Methods inherited from class io.repseq.seqbase.AbstractRAFastaResolver

resolve, resolveReader

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface io.repseq.seqbase.SequenceResolver

resolve

Constructor Detail

RAWHTTPResolver

public RAWHTTPResolver(HTTPResolversContext context)

Method Detail

resolveHTTPAddress

protected java.net.URI resolveHTTPAddress(java.net.URI address)

Description copied from class: HTTPFastaSequenceResolver

Resolves address to http/https link

Specified by:

resolveHTTPAddress in class HTTPFastaSequenceResolver

Parameters:

address - original address

Returns:

http/https link

resolveRecordId

protected java.lang.String resolveRecordId(java.net.URI address)

Description copied from class: AbstractRAFastaResolver

Extracts record name from original address

Specified by:

resolveRecordId in class AbstractRAFastaResolver

Parameters:

address - original address

Returns:

record id

canResolve

public boolean canResolve(SequenceAddress address)

Description copied from interface: OptionalSequenceResolver

Returns true if can resolve such address

Parameters:

address - address

Returns: