io.repseq.gen.dist

Interface InsertModel

All Superinterfaces:

Model

All Known Implementing Classes:

FixedInsertModel, MarkovInsertModel, MarkovInsertModel.Model3, MarkovInsertModel.Model5

public interface InsertModel
extends Model

Method Summary

Modifier and Type	Method and Description
InsertGenerator	create(org.apache.commons.math3.random.RandomGenerator random, boolean v, java.util.List<VDJCGene> vGenes, java.util.List<VDJCGene> dGenes, java.util.List<VDJCGene> jGenes, java.util.List<VDJCGene> cGenes) Initialize insert generator

Method Detail

create

InsertGenerator create(org.apache.commons.math3.random.RandomGenerator random,
                       boolean v,
                       java.util.List<VDJCGene> vGenes,
                       java.util.List<VDJCGene> dGenes,
                       java.util.List<VDJCGene> jGenes,
                       java.util.List<VDJCGene> cGenes)

Initialize insert generator

Parameters:

random - source of random data

v - true for V(J/D) insert, false for DJ insert

Returns:

insert generator