io.repseq.gen.dist

Class FixedInsertModel

java.lang.Object

io.repseq.gen.dist.FixedInsertModel

All Implemented Interfaces:

InsertModel, Model

public final class FixedInsertModel
extends java.lang.Object
implements InsertModel

Field Summary

Fields

Modifier and Type	Field and Description
com.milaboratory.core.sequence.NucleotideSequence	sequence

Constructor Summary

Constructors

Constructor and Description
FixedInsertModel(com.milaboratory.core.sequence.NucleotideSequence sequence)

Method Summary

Modifier and Type	Method and Description
InsertGenerator	create(org.apache.commons.math3.random.RandomGenerator random, boolean v, java.util.List<VDJCGene> vGenes, java.util.List<VDJCGene> dGenes, java.util.List<VDJCGene> jGenes, java.util.List<VDJCGene> cGenes) Initialize insert generator
boolean	equals(java.lang.Object o)
int	hashCode()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Field Detail

sequence

public final com.milaboratory.core.sequence.NucleotideSequence sequence

Constructor Detail

FixedInsertModel

public FixedInsertModel(com.milaboratory.core.sequence.NucleotideSequence sequence)

Method Detail

create

public InsertGenerator create(org.apache.commons.math3.random.RandomGenerator random,
                              boolean v,
                              java.util.List<VDJCGene> vGenes,
                              java.util.List<VDJCGene> dGenes,
                              java.util.List<VDJCGene> jGenes,
                              java.util.List<VDJCGene> cGenes)

Description copied from interface: InsertModel

Initialize insert generator

Specified by:

create in interface InsertModel

Parameters:

random - source of random data

v - true for V(J/D) insert, false for DJ insert

Returns:

insert generator

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object