io.repseq.gen.dist

Class DJDependentVDJCGenesModel

java.lang.Object

io.repseq.gen.dist.DJDependentVDJCGenesModel

All Implemented Interfaces:

Model, VDJCGenesModel

public final class DJDependentVDJCGenesModel
extends java.lang.Object
implements VDJCGenesModel

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	DJDependentVDJCGenesModel.VDJCGene2

Constructor Summary

Constructors

Constructor and Description
DJDependentVDJCGenesModel(java.util.Map<java.lang.String,java.lang.Double> v, java.util.Map<java.lang.String,java.lang.Double> dj, java.util.Map<java.lang.String,java.lang.Double> c)

Method Summary

Modifier and Type	Method and Description
VDJCGenesGenerator	create(org.apache.commons.math3.random.RandomGenerator random, VDJCLibrary library)
static java.util.List<VDJCGene>	genes(org.apache.commons.math3.distribution.EnumeratedDistribution<DJDependentVDJCGenesModel.VDJCGene2> d, int index)
static org.apache.commons.math3.distribution.EnumeratedDistribution<DJDependentVDJCGenesModel.VDJCGene2>	toDistribution2(org.apache.commons.math3.random.RandomGenerator random, VDJCLibrary library, java.util.Map<java.lang.String,java.lang.Double> distMap, GeneType geneType1, GeneType geneType2)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DJDependentVDJCGenesModel

public DJDependentVDJCGenesModel(java.util.Map<java.lang.String,java.lang.Double> v,
                                 java.util.Map<java.lang.String,java.lang.Double> dj,
                                 java.util.Map<java.lang.String,java.lang.Double> c)

Method Detail

toDistribution2

public static org.apache.commons.math3.distribution.EnumeratedDistribution<DJDependentVDJCGenesModel.VDJCGene2> toDistribution2(org.apache.commons.math3.random.RandomGenerator random,
                                                                                                                                VDJCLibrary library,
                                                                                                                                java.util.Map<java.lang.String,java.lang.Double> distMap,
                                                                                                                                GeneType geneType1,
                                                                                                                                GeneType geneType2)

create

public VDJCGenesGenerator create(org.apache.commons.math3.random.RandomGenerator random,
                                 VDJCLibrary library)

Specified by:

create in interface VDJCGenesModel

genes

public static java.util.List<VDJCGene> genes(org.apache.commons.math3.distribution.EnumeratedDistribution<DJDependentVDJCGenesModel.VDJCGene2> d,
                                             int index)