io.repseq.gen.dist

Class DJCDependentVDJCGenesModel

java.lang.Object

io.repseq.gen.dist.DJCDependentVDJCGenesModel

All Implemented Interfaces:

Model, VDJCGenesModel

public final class DJCDependentVDJCGenesModel
extends java.lang.Object
implements VDJCGenesModel

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	DJCDependentVDJCGenesModel.VDJCGene3

Constructor Summary

Constructors

Constructor and Description
DJCDependentVDJCGenesModel(java.util.Map<java.lang.String,java.lang.Double> v, java.util.Map<java.lang.String,java.lang.Double> djc)

Method Summary

Modifier and Type	Method and Description
VDJCGenesGenerator	create(org.apache.commons.math3.random.RandomGenerator random, VDJCLibrary library)
static java.util.List<VDJCGene>	genes(org.apache.commons.math3.distribution.EnumeratedDistribution<DJCDependentVDJCGenesModel.VDJCGene3> d, int index)
static org.apache.commons.math3.distribution.EnumeratedDistribution<DJCDependentVDJCGenesModel.VDJCGene3>	toDistribution3(org.apache.commons.math3.random.RandomGenerator random, VDJCLibrary library, java.util.Map<java.lang.String,java.lang.Double> distMap, GeneType geneType1, GeneType geneType2, GeneType geneType3)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DJCDependentVDJCGenesModel

public DJCDependentVDJCGenesModel(java.util.Map<java.lang.String,java.lang.Double> v,
                                  java.util.Map<java.lang.String,java.lang.Double> djc)

Method Detail

toDistribution3

public static org.apache.commons.math3.distribution.EnumeratedDistribution<DJCDependentVDJCGenesModel.VDJCGene3> toDistribution3(org.apache.commons.math3.random.RandomGenerator random,
                                                                                                                                 VDJCLibrary library,
                                                                                                                                 java.util.Map<java.lang.String,java.lang.Double> distMap,
                                                                                                                                 GeneType geneType1,
                                                                                                                                 GeneType geneType2,
                                                                                                                                 GeneType geneType3)

create

public VDJCGenesGenerator create(org.apache.commons.math3.random.RandomGenerator random,
                                 VDJCLibrary library)

Specified by:

create in interface VDJCGenesModel

genes

public static java.util.List<VDJCGene> genes(org.apache.commons.math3.distribution.EnumeratedDistribution<DJCDependentVDJCGenesModel.VDJCGene3> d,
                                             int index)