io.repseq.gen

Class GRepertoireReader

java.lang.Object

io.repseq.gen.GRepertoireReader

All Implemented Interfaces:

cc.redberry.pipe.OutputPort<GClone>, cc.redberry.pipe.OutputPortCloseable<GClone>, java.lang.AutoCloseable

public final class GRepertoireReader
extends java.lang.Object
implements cc.redberry.pipe.OutputPortCloseable<GClone>

Constructor Summary

Constructors

Constructor and Description
GRepertoireReader(java.io.BufferedReader reader)

Method Summary

Modifier and Type	Method and Description
void	close()
VDJCLibrary	getLibrary()
GRepertoire	readeFully()
GClone	take()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GRepertoireReader

public GRepertoireReader(java.io.BufferedReader reader)
                  throws java.io.IOException

Throws:

java.io.IOException

Method Detail

getLibrary

public VDJCLibrary getLibrary()

close

public void close()

Specified by:

close in interface cc.redberry.pipe.OutputPortCloseable<GClone>

Specified by:

close in interface java.lang.AutoCloseable

take

public GClone take()

Specified by:

take in interface cc.redberry.pipe.OutputPort<GClone>

readeFully

public GRepertoire readeFully()