io.repseq.core

Class VDJCGeneId

java.lang.Object

io.repseq.core.VDJCGeneId

All Implemented Interfaces:

java.lang.Comparable<VDJCGeneId>

public final class VDJCGeneId
extends java.lang.Object
implements java.lang.Comparable<VDJCGeneId>

Constructor Summary

Constructors

Constructor and Description
VDJCGeneId(VDJCLibraryId libraryId, java.lang.String geneName)

Method Summary

Modifier and Type	Method and Description
int	compareTo(VDJCGeneId o)
static VDJCGeneId	decode(java.lang.String str) Decode string representation returned by getFullName() into VDJCGeneId object Format: libraryName:taxonId[:checksum]/geneName
boolean	equals(java.lang.Object o)
java.lang.String	getFullName() Return full gene name.
VDJCLibraryId	getLibraryId()
java.lang.String	getName() Return gene name.
int	hashCode()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

VDJCGeneId

public VDJCGeneId(VDJCLibraryId libraryId,
                  java.lang.String geneName)

Method Detail

getLibraryId

public VDJCLibraryId getLibraryId()

getName

public java.lang.String getName()

Return gene name. Like: TRBV12-3*00, etc...

getFullName

public java.lang.String getFullName()

Return full gene name. Can be decoded using decode(String) Format: libraryName:taxonId[:checksum]/geneName

compareTo

public int compareTo(VDJCGeneId o)

Specified by:

compareTo in interface java.lang.Comparable<VDJCGeneId>

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

decode

public static VDJCGeneId decode(java.lang.String str)

Decode string representation returned by getFullName() into VDJCGeneId object Format: libraryName:taxonId[:checksum]/geneName

Parameters:

str - string representation

Returns:

VDJCGeneId object