io.repseq.core

Class GeneFeature.ReferenceRange

java.lang.Object

io.repseq.core.GeneFeature.ReferenceRange

All Implemented Interfaces:

java.io.Serializable

Enclosing class:

GeneFeature

public static final class GeneFeature.ReferenceRange
extends java.lang.Object
implements java.io.Serializable

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
ReferencePoint	begin
ReferencePoint	end

Method Summary

Modifier and Type	Method and Description
boolean	contains(GeneFeature.ReferenceRange range)
boolean	equals(java.lang.Object o)
java.util.List<ReferencePoint>	getBoundaryAndIntermediatePoints()
GeneType	getGeneType()
java.util.List<ReferencePoint>	getIntermediatePoints()
ReferencePoint	getLeftBoundary()
ReferencePoint	getRightBoundary()
GeneFeature.ReferenceRange	getWithoutOffset()
int	hashCode()
boolean	hasOffsets()
boolean	isReversed()
GeneFeature.ReferenceRange	reverse()
java.lang.String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

begin

public final ReferencePoint begin

end

public final ReferencePoint end

Method Detail

getBoundaryAndIntermediatePoints

public java.util.List<ReferencePoint> getBoundaryAndIntermediatePoints()

getIntermediatePoints

public java.util.List<ReferencePoint> getIntermediatePoints()

isReversed

public boolean isReversed()

reverse

public GeneFeature.ReferenceRange reverse()

getGeneType

public GeneType getGeneType()

hasOffsets

public boolean hasOffsets()

getWithoutOffset

public GeneFeature.ReferenceRange getWithoutOffset()

contains

public boolean contains(GeneFeature.ReferenceRange range)

getLeftBoundary

public ReferencePoint getLeftBoundary()

getRightBoundary

public ReferencePoint getRightBoundary()

equals

public boolean equals(java.lang.Object o)

Overrides:

equals in class java.lang.Object

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object