io.repseq.cli

Class TsvAction.Params

java.lang.Object

com.milaboratory.cli.ActionParameters

com.milaboratory.cli.ActionParametersWithOutput

io.repseq.cli.TsvAction.Params

Enclosing class:

TsvAction

public static final class TsvAction.Params
extends com.milaboratory.cli.ActionParametersWithOutput

Field Summary

Fields

Modifier and Type	Field and Description
java.lang.String	chain
java.util.List<CLIUtils.GeneFeatureWithOriginalName>	features
java.lang.String	name
boolean	oneBased
java.util.List<java.lang.String>	parameters
java.lang.String	species
java.lang.Long	taxonId

Fields inherited from class com.milaboratory.cli.ActionParametersWithOutput

force

Fields inherited from class com.milaboratory.cli.ActionParameters

help

Constructor Summary

Constructors

Constructor and Description
Params()

Method Summary

Modifier and Type	Method and Description
java.lang.String	getInput()
protected java.util.List<java.lang.String>	getOutputFiles()
java.io.OutputStream	getOutputStream()
boolean	isOneBased()

Methods inherited from class com.milaboratory.cli.ActionParametersWithOutput

handleExistenceOfOutputFile, isForceOverwrite, validate

Methods inherited from class com.milaboratory.cli.ActionParameters

forceHideParameters, help

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

parameters

public java.util.List<java.lang.String> parameters

taxonId

public java.lang.Long taxonId

species

public java.lang.String species

chain

public java.lang.String chain

name

public java.lang.String name

oneBased

public boolean oneBased

features

public java.util.List<CLIUtils.GeneFeatureWithOriginalName> features

Constructor Detail

Params

public Params()

Method Detail

isOneBased

public boolean isOneBased()

getInput

public java.lang.String getInput()

getOutputStream

public java.io.OutputStream getOutputStream()
                                     throws java.io.FileNotFoundException

Throws:

java.io.FileNotFoundException

getOutputFiles

protected java.util.List<java.lang.String> getOutputFiles()

Specified by:

getOutputFiles in class com.milaboratory.cli.ActionParametersWithOutput