io.repseq.cli

Class InferAnchorPointsAction.Params

java.lang.Object

com.milaboratory.cli.ActionParameters

com.milaboratory.cli.ActionParametersWithOutput

io.repseq.cli.InferAnchorPointsAction.Params

Enclosing class:

InferAnchorPointsAction

public static final class InferAnchorPointsAction.Params
extends com.milaboratory.cli.ActionParametersWithOutput

Field Summary

Fields

Modifier and Type	Field and Description
java.lang.Integer	absoluteMinScore
java.util.List<java.lang.String>	feature
java.lang.String	name
boolean	onlyModified
java.util.List<java.lang.String>	parameters

Fields inherited from class com.milaboratory.cli.ActionParametersWithOutput

force

Fields inherited from class com.milaboratory.cli.ActionParameters

help

Constructor Summary

Constructors

Constructor and Description
Params()

Method Summary

Modifier and Type	Method and Description
java.lang.Integer	getAbsoluteMinScore(GeneFeature gf)
java.util.List<GeneFeature>	getGeneFeature()
java.lang.String	getInput()
java.lang.String	getOutput()
protected java.util.List<java.lang.String>	getOutputFiles()
java.util.List<java.lang.String>	getReference()
boolean	outputOnlyModified()

Methods inherited from class com.milaboratory.cli.ActionParametersWithOutput

handleExistenceOfOutputFile, isForceOverwrite, validate

Methods inherited from class com.milaboratory.cli.ActionParameters

forceHideParameters, help

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

parameters

public java.util.List<java.lang.String> parameters

name

public java.lang.String name

onlyModified

public boolean onlyModified

feature

public java.util.List<java.lang.String> feature

absoluteMinScore

public java.lang.Integer absoluteMinScore

Constructor Detail

Params

public Params()

Method Detail

getAbsoluteMinScore

public java.lang.Integer getAbsoluteMinScore(GeneFeature gf)

outputOnlyModified

public boolean outputOnlyModified()

getGeneFeature

public java.util.List<GeneFeature> getGeneFeature()

getInput

public java.lang.String getInput()

getReference

public java.util.List<java.lang.String> getReference()

getOutput

public java.lang.String getOutput()

getOutputFiles

protected java.util.List<java.lang.String> getOutputFiles()

Specified by:

getOutputFiles in class com.milaboratory.cli.ActionParametersWithOutput