io.repseq.cli

Class FromFastaActionAbstract<P extends FromFastaParametersAbstract>

java.lang.Object

io.repseq.cli.FromFastaActionAbstract<P>

All Implemented Interfaces:

com.milaboratory.cli.Action

Direct Known Subclasses:

FromFastaAction, FromPaddedFastaAction

public abstract class FromFastaActionAbstract<P extends FromFastaParametersAbstract>
extends java.lang.Object
implements com.milaboratory.cli.Action

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	FromFastaActionAbstract.EmbeddedWriter
class	FromFastaActionAbstract.ExistingFileWriter
class	FromFastaActionAbstract.FastaSequenceStorage

Field Summary

Fields

Modifier and Type	Field and Description
P	params

Constructor Summary

Constructors

Constructor and Description
FromFastaActionAbstract(P params)

Method Summary

Modifier and Type	Method and Description
void	go(com.milaboratory.cli.ActionHelper helper)
P	params()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface com.milaboratory.cli.Action

command

Field Detail

params

public P extends FromFastaParametersAbstract params

Constructor Detail

FromFastaActionAbstract

public FromFastaActionAbstract(P params)

Method Detail

go

public void go(com.milaboratory.cli.ActionHelper helper)
        throws java.lang.Exception

Specified by:

go in interface com.milaboratory.cli.Action

Throws:

java.lang.Exception

params

public P params()

Specified by:

params in interface com.milaboratory.cli.Action