io.repseq.cli

Class FromFastaActionAbstract.FastaSequenceStorage

java.lang.Object

io.repseq.cli.FromFastaActionAbstract.FastaSequenceStorage

Enclosing class:

FromFastaActionAbstract<P extends FromFastaParametersAbstract>

public final class FromFastaActionAbstract.FastaSequenceStorage
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
FastaSequenceStorage(java.nio.file.Path libraryPath, java.nio.file.Path fastaPath)

Method Summary

Modifier and Type	Method and Description
void	close()
java.util.List<KnownSequenceFragmentData>	getBase()
BaseSequence	storeSequence(com.milaboratory.core.sequence.NucleotideSequence sequence, java.lang.String geneId, java.lang.String fullDescription)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FastaSequenceStorage

public FastaSequenceStorage(java.nio.file.Path libraryPath,
                            java.nio.file.Path fastaPath)
                     throws java.io.FileNotFoundException

Throws:

java.io.FileNotFoundException

Method Detail

getBase

public java.util.List<KnownSequenceFragmentData> getBase()

storeSequence

public BaseSequence storeSequence(com.milaboratory.core.sequence.NucleotideSequence sequence,
                                  java.lang.String geneId,
                                  java.lang.String fullDescription)

close

public void close()
           throws java.lang.Exception

Throws:

java.lang.Exception