io.repseq.cli

Class FromFastaActionAbstract.ExistingFileWriter

java.lang.Object

io.repseq.cli.FromFastaActionAbstract.ExistingFileWriter

Enclosing class:

FromFastaActionAbstract<P extends FromFastaParametersAbstract>

public final class FromFastaActionAbstract.ExistingFileWriter
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
ExistingFileWriter(java.nio.file.Path libraryPath, java.nio.file.Path fastaPath)

Method Summary

Modifier and Type	Method and Description
void	close()
java.util.List<KnownSequenceFragmentData>	getBase()
BaseSequence	storeSequence(com.milaboratory.core.sequence.NucleotideSequence sequence, java.lang.String geneId, java.lang.String fullDescription)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExistingFileWriter

public ExistingFileWriter(java.nio.file.Path libraryPath,
                          java.nio.file.Path fastaPath)
                   throws java.io.FileNotFoundException

Throws:

java.io.FileNotFoundException

Method Detail

getBase

public java.util.List<KnownSequenceFragmentData> getBase()

storeSequence

public BaseSequence storeSequence(com.milaboratory.core.sequence.NucleotideSequence sequence,
                                  java.lang.String geneId,
                                  java.lang.String fullDescription)

close

public void close()
           throws java.lang.Exception

Throws:

java.lang.Exception