io.repseq.cli

Class FromFastaActionAbstract.EmbeddedWriter

java.lang.Object

io.repseq.cli.FromFastaActionAbstract.EmbeddedWriter

Enclosing class:

FromFastaActionAbstract<P extends FromFastaParametersAbstract>

public final class FromFastaActionAbstract.EmbeddedWriter
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
EmbeddedWriter()

Method Summary

Modifier and Type	Method and Description
void	close()
java.util.List<KnownSequenceFragmentData>	getBase()
BaseSequence	storeSequence(com.milaboratory.core.sequence.NucleotideSequence sequence, java.lang.String geneId, java.lang.String fullDescription)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EmbeddedWriter

public EmbeddedWriter()

Method Detail

getBase

public java.util.List<KnownSequenceFragmentData> getBase()

storeSequence

public BaseSequence storeSequence(com.milaboratory.core.sequence.NucleotideSequence sequence,
                                  java.lang.String geneId,
                                  java.lang.String fullDescription)

close

public void close()
           throws java.lang.Exception

Throws:

java.lang.Exception