public static final class FromFastaAction.ActionParameters extends FromFastaParametersAbstract
| Modifier and Type | Field and Description |
|---|---|
java.util.List<java.lang.String> |
parameters |
chain, functionalityIndex, functionalityRegexp, geneFeature, geneType, ignoreDuplicates, nameIndex, patterns, points, speciesNames, taxonId| Constructor and Description |
|---|
ActionParameters() |
| Modifier and Type | Method and Description |
|---|---|
boolean |
doEmbedSequences()
Whether to embed sequence information into JSON output library file.
|
char |
getPaddingCharacter() |
java.util.List<java.lang.String> |
getParameters() |
void |
validate() |
getFunctionalityRegexp, getGeneFeature, getGeneType, getIgnoreDuplicates, getInput, getOutputFasta, getOutputFiles, getOutputJSONpublic java.util.List<java.lang.String> getParameters()
getParameters in class FromFastaParametersAbstractpublic boolean doEmbedSequences()
FromFastaParametersAbstractFromFastaParametersAbstract.getOutputFasta() is null, input files will be directly linked inside
json library, (2) if FromFastaParametersAbstract.getOutputFasta() is defined, separate file will be created, and linked inside
newly created JSON library.doEmbedSequences in class FromFastaParametersAbstractpublic char getPaddingCharacter()
getPaddingCharacter in class FromFastaParametersAbstractpublic void validate()
validate in class FromFastaParametersAbstract