io.repseq.cli

Class FastaAction.Params

java.lang.Object

com.milaboratory.cli.ActionParameters

com.milaboratory.cli.ActionParametersWithOutput

io.repseq.cli.FastaAction.Params

Enclosing class:

FastaAction

public static final class FastaAction.Params
extends com.milaboratory.cli.ActionParametersWithOutput

Field Summary

Fields

Modifier and Type	Field and Description
java.lang.String	chain
java.lang.String	feature
java.lang.String	name
java.util.List<java.lang.String>	parameters
java.lang.String	species
java.lang.Long	taxonId

Fields inherited from class com.milaboratory.cli.ActionParametersWithOutput

force

Fields inherited from class com.milaboratory.cli.ActionParameters

help

Constructor Summary

Constructors

Constructor and Description
Params()

Method Summary

Modifier and Type	Method and Description
GeneFeature	getGeneFeature()
java.lang.String	getInput()
java.lang.String	getOutput()
protected java.util.List<java.lang.String>	getOutputFiles()

Methods inherited from class com.milaboratory.cli.ActionParametersWithOutput

handleExistenceOfOutputFile, isForceOverwrite, validate

Methods inherited from class com.milaboratory.cli.ActionParameters

forceHideParameters, help

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

parameters

public java.util.List<java.lang.String> parameters

taxonId

public java.lang.Long taxonId

species

public java.lang.String species

chain

public java.lang.String chain

name

public java.lang.String name

feature

public java.lang.String feature

Constructor Detail

Params

public Params()

Method Detail

getGeneFeature

public GeneFeature getGeneFeature()

getInput

public java.lang.String getInput()

getOutput

public java.lang.String getOutput()

getOutputFiles

protected java.util.List<java.lang.String> getOutputFiles()

Specified by:

getOutputFiles in class com.milaboratory.cli.ActionParametersWithOutput