io.repseq.cli

Class ExportCloneSequencesAction.Params

java.lang.Object

com.milaboratory.cli.ActionParameters

com.milaboratory.cli.ActionParametersWithOutput

io.repseq.cli.ExportCloneSequencesAction.Params

Enclosing class:

ExportCloneSequencesAction

public static final class ExportCloneSequencesAction.Params
extends com.milaboratory.cli.ActionParametersWithOutput

Field Summary

Fields

Modifier and Type	Field and Description
java.lang.String	chains
java.util.List<java.lang.String>	descriptionFields
java.lang.Double	factor
java.lang.String	feature
java.util.List<java.lang.String>	parameters

Fields inherited from class com.milaboratory.cli.ActionParametersWithOutput

force

Fields inherited from class com.milaboratory.cli.ActionParameters

help

Constructor Summary

Constructors

Constructor and Description
Params()

Method Summary

Modifier and Type	Method and Description
Chains	getChains()
java.util.List<io.repseq.cli.ExportCloneSequencesAction.DescriptionExtractor>	getExtractors(VDJCLibrary library)
GeneFeature	getGeneFeature()
java.lang.String	getInput()
java.lang.String	getOutput()
protected java.util.List<java.lang.String>	getOutputFiles()
void	validate()

Methods inherited from class com.milaboratory.cli.ActionParametersWithOutput

handleExistenceOfOutputFile, isForceOverwrite

Methods inherited from class com.milaboratory.cli.ActionParameters

forceHideParameters, help

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

parameters

public java.util.List<java.lang.String> parameters

factor

public java.lang.Double factor

chains

public java.lang.String chains

feature

public java.lang.String feature

descriptionFields

public java.util.List<java.lang.String> descriptionFields

Constructor Detail

Params

public Params()

Method Detail

getGeneFeature

public GeneFeature getGeneFeature()

getChains

public Chains getChains()

getInput

public java.lang.String getInput()

getOutput

public java.lang.String getOutput()

getExtractors

public java.util.List<io.repseq.cli.ExportCloneSequencesAction.DescriptionExtractor> getExtractors(VDJCLibrary library)

getOutputFiles

protected java.util.List<java.lang.String> getOutputFiles()

Specified by:

getOutputFiles in class com.milaboratory.cli.ActionParametersWithOutput

validate

public void validate()

Overrides:

validate in class com.milaboratory.cli.ActionParametersWithOutput