io.repseq.cli

Class CLIUtils

java.lang.Object

io.repseq.cli.CLIUtils

public final class CLIUtils
extends java.lang.Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	CLIUtils.GeneFeatureConverter
static class	CLIUtils.GeneFeatureSplitter
static class	CLIUtils.GeneFeatureValidator
static class	CLIUtils.GeneFeatureWithOriginalName Represents pair of gene feature object along with original string representation specified by user.

Method Summary

Modifier and Type	Method and Description
static java.io.BufferedOutputStream	createBufferedOutputStream(java.lang.String fileName)
static java.io.BufferedReader	createBufferedReader(java.lang.String fileName)
static com.milaboratory.core.io.sequence.fasta.FastaWriter<com.milaboratory.core.sequence.NucleotideSequence>	createSingleFastaWriter(java.lang.String fileName)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

createBufferedReader

public static java.io.BufferedReader createBufferedReader(java.lang.String fileName)
                                                   throws java.io.IOException

Throws:

java.io.IOException

createBufferedOutputStream

public static java.io.BufferedOutputStream createBufferedOutputStream(java.lang.String fileName)
                                                               throws java.io.IOException

Throws:

java.io.IOException

createSingleFastaWriter

public static com.milaboratory.core.io.sequence.fasta.FastaWriter<com.milaboratory.core.sequence.NucleotideSequence> createSingleFastaWriter(java.lang.String fileName)
                                                                                                                                      throws java.io.IOException

Throws:

java.io.IOException