io.repseq.util

Class SequenceBase

java.lang.Object

io.repseq.util.SequenceBase

public final class SequenceBase
extends Object

Storage of fragmented sequences.

Constructor Summary

Constructors

Constructor and Description
SequenceBase()

Method Summary

Methods

Modifier and Type	Method and Description
com.milaboratory.core.sequence.NucleotideSequence	get(String accession, com.milaboratory.core.Range range)
com.milaboratory.core.Range	getAvailableRange(String accession, com.milaboratory.core.Range range)
boolean	isEmpty()
void	put(String accession, int from, com.milaboratory.core.sequence.NucleotideSequence sequence)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SequenceBase

public SequenceBase()

Method Detail

put

public void put(String accession,
       int from,
       com.milaboratory.core.sequence.NucleotideSequence sequence)

get

public com.milaboratory.core.sequence.NucleotideSequence get(String accession,
                                                    com.milaboratory.core.Range range)

getAvailableRange

public com.milaboratory.core.Range getAvailableRange(String accession,
                                            com.milaboratory.core.Range range)

isEmpty

public boolean isEmpty()