io.repseq.seqbase

Class HTTPSequenceResolvers.NucCoreResolver

java.lang.Object

io.repseq.seqbase.AbstractRAFastaResolver

io.repseq.seqbase.HTTPFastaSequenceResolver

io.repseq.seqbase.HTTPSequenceResolvers.NucCoreResolver

All Implemented Interfaces:

OptionalSequenceResolver, SequenceResolver

Enclosing class:

HTTPSequenceResolvers

public static class HTTPSequenceResolvers.NucCoreResolver
extends HTTPFastaSequenceResolver

nuccore://568815591

Field Summary

Fields inherited from class io.repseq.seqbase.HTTPFastaSequenceResolver

CHUNK_SIZE

Constructor Summary

Constructors

Constructor and Description
HTTPSequenceResolvers.NucCoreResolver(HTTPResolversContext context)

Method Summary

Methods

Modifier and Type	Method and Description
boolean	canResolve(SequenceAddress address) Returns true if can resolve such address
protected String	resolveCacheFileName(URI address) Resolves HTTP address to file name
protected URI	resolveHTTPAddress(URI address) Resolves address to http/https link
protected String	resolveRecordId(URI address) Extracts record name from original address

Methods inherited from class io.repseq.seqbase.HTTPFastaSequenceResolver

ensureCacheDirExist, getCacheDir, getFASTAFile, getReporter, resolveReaderId

Methods inherited from class io.repseq.seqbase.AbstractRAFastaResolver

resolve, resolveReader

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface io.repseq.seqbase.SequenceResolver

resolve

Constructor Detail

HTTPSequenceResolvers.NucCoreResolver

public HTTPSequenceResolvers.NucCoreResolver(HTTPResolversContext context)

Method Detail

resolveCacheFileName

protected String resolveCacheFileName(URI address)

Description copied from class: HTTPFastaSequenceResolver

Resolves HTTP address to file name

Overrides:

resolveCacheFileName in class HTTPFastaSequenceResolver

Parameters:

address - initialAddress

Returns:

file name

resolveHTTPAddress

protected URI resolveHTTPAddress(URI address)

Description copied from class: HTTPFastaSequenceResolver

Resolves address to http/https link

Specified by:

resolveHTTPAddress in class HTTPFastaSequenceResolver

Parameters:

address - original address

Returns:

http/https link

resolveRecordId

protected String resolveRecordId(URI address)

Description copied from class: AbstractRAFastaResolver

Extracts record name from original address

Specified by:

resolveRecordId in class AbstractRAFastaResolver

Parameters:

address - original address

Returns:

record id

canResolve

public boolean canResolve(SequenceAddress address)

Description copied from interface: OptionalSequenceResolver

Returns true if can resolve such address

Parameters:

address - address

Returns: