io.repseq.gen.dist

Interface InsertModel

All Superinterfaces:

Model

All Known Implementing Classes:

FixedInsertModel, MarkovInsertModel, MarkovInsertModel.Model3, MarkovInsertModel.Model5

public interface InsertModel
extends Model

Method Summary

Methods

Modifier and Type	Method and Description
InsertGenerator	create(org.apache.commons.math3.random.RandomGenerator random, boolean v, List<VDJCGene> vGenes, List<VDJCGene> dGenes, List<VDJCGene> jGenes, List<VDJCGene> cGenes) Initialize insert generator

Method Detail

create

InsertGenerator create(org.apache.commons.math3.random.RandomGenerator random,
                     boolean v,
                     List<VDJCGene> vGenes,
                     List<VDJCGene> dGenes,
                     List<VDJCGene> jGenes,
                     List<VDJCGene> cGenes)

Initialize insert generator

Parameters:

random - source of random data

v - true for V(J/D) insert, false for DJ insert

Returns:

insert generator