io.repseq.gen.dist

Class IndependentVDJCGenesModel

java.lang.Object

io.repseq.gen.dist.IndependentVDJCGenesModel

All Implemented Interfaces:

Model, VDJCGenesModel

public final class IndependentVDJCGenesModel
extends Object
implements VDJCGenesModel

Field Summary

Fields

Modifier and Type	Field and Description
Map<String,Double>	c
Map<String,Double>	d
Map<String,Double>	j
Map<String,Double>	v

Constructor Summary

Constructors

Constructor and Description
IndependentVDJCGenesModel(Map<String,Double> v, Map<String,Double> d, Map<String,Double> j, Map<String,Double> c)

Method Summary

Methods

Modifier and Type	Method and Description
VDJCGenesGenerator	create(org.apache.commons.math3.random.RandomGenerator random, VDJCLibrary library)
boolean	equals(Object o)
static VDJCGene	geneOrNull(VDJCLibrary library, String name, GeneType expectedGeneType)
static List<VDJCGene>	genes(org.apache.commons.math3.distribution.EnumeratedDistribution<VDJCGene> d)
int	hashCode()
static org.apache.commons.math3.distribution.EnumeratedDistribution<VDJCGene>	toDistribution(org.apache.commons.math3.random.RandomGenerator random, VDJCLibrary library, Map<String,Double> distMap, GeneType geneType)

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Field Detail

v

public final Map<String,Double> v

d

public final Map<String,Double> d

j

public final Map<String,Double> j

c

public final Map<String,Double> c

Constructor Detail

IndependentVDJCGenesModel

public IndependentVDJCGenesModel(Map<String,Double> v,
                         Map<String,Double> d,
                         Map<String,Double> j,
                         Map<String,Double> c)

Method Detail

geneOrNull

public static VDJCGene geneOrNull(VDJCLibrary library,
                  String name,
                  GeneType expectedGeneType)

toDistribution

public static org.apache.commons.math3.distribution.EnumeratedDistribution<VDJCGene> toDistribution(org.apache.commons.math3.random.RandomGenerator random,
                                                                                    VDJCLibrary library,
                                                                                    Map<String,Double> distMap,
                                                                                    GeneType geneType)

genes

public static List<VDJCGene> genes(org.apache.commons.math3.distribution.EnumeratedDistribution<VDJCGene> d)

create

public VDJCGenesGenerator create(org.apache.commons.math3.random.RandomGenerator random,
                        VDJCLibrary library)

Specified by:

create in interface VDJCGenesModel

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object