io.repseq.gen

Class VDJTrimming

java.lang.Object

io.repseq.gen.VDJTrimming

public final class VDJTrimming
extends Object

Represents information on number of nucleotides deleted from 3' V, 5' J and both sides of D gene, if present; or sizes of corresponding P-segments. Negative values represent deletions, positive values represent length of P-segment.

Field Summary

Fields

Modifier and Type	Field and Description
DTrimming	dTrimming
int	jTrimming
int	vTrimming

Constructor Summary

Constructors

Constructor and Description
VDJTrimming(int vTrimming, int jTrimming)
VDJTrimming(int vTrimming, int jTrimming, DTrimming dTrimming)
VDJTrimming(int vTrimming, int jTrimming, Integer d5Trimming, Integer d3Trimming)
VDJTrimming(int vTrimming, int jTrimming, int d5Trimming, int d3Trimming)

Method Summary

Methods

Modifier and Type	Method and Description
boolean	equals(Object o)
int	hashCode()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Field Detail

vTrimming

public final int vTrimming

jTrimming

public final int jTrimming

dTrimming

public final DTrimming dTrimming

Constructor Detail

VDJTrimming

public VDJTrimming(int vTrimming,
           int jTrimming,
           DTrimming dTrimming)

VDJTrimming

public VDJTrimming(int vTrimming,
           int jTrimming)

VDJTrimming

public VDJTrimming(int vTrimming,
           int jTrimming,
           int d5Trimming,
           int d3Trimming)

VDJTrimming

public VDJTrimming(int vTrimming,
           int jTrimming,
           Integer d5Trimming,
           Integer d3Trimming)

Method Detail

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object