Uses of Class
io.repseq.dto.VDJCLibraryData

Packages that use VDJCLibraryData

Package	Description
io.repseq.core
io.repseq.dto

Uses of VDJCLibraryData in io.repseq.core

Methods in io.repseq.core that return VDJCLibraryData

Modifier and Type	Method and Description
VDJCLibraryData	VDJCLibrary.getData() Returns serializable library data
VDJCLibraryData[]	VDJCLibraryRegistry.LibraryResolver.resolve(String libraryName)
VDJCLibraryData[]	VDJCLibraryRegistry.FolderLibraryResolver.resolve(String libraryName)
VDJCLibraryData[]	VDJCLibraryRegistry.ClasspathLibraryResolver.resolve(String libraryName)

Methods in io.repseq.core with parameters of type VDJCLibraryData

Modifier and Type	Method and Description
VDJCLibrary	VDJCLibraryRegistry.registerLibrary(Path context, String name, VDJCLibraryData data) Creates and registers single library from VDJCLibraryData

Constructors in io.repseq.core with parameters of type VDJCLibraryData

Constructor and Description
VDJCLibrary(VDJCLibraryData libraryData, String name, VDJCLibraryRegistry registry, Path context)

Uses of VDJCLibraryData in io.repseq.dto

Methods in io.repseq.dto that return VDJCLibraryData

Modifier and Type	Method and Description
static VDJCLibraryData[]	VDJCDataUtils.merge(List<VDJCLibraryData> libraries) Merges VDJCLibraryData objects for the same species into single object.
static VDJCLibraryData[]	VDJCDataUtils.readArrayFromFile(Path file)
static VDJCLibraryData[]	VDJCDataUtils.readArrayFromFile(String file)

Methods in io.repseq.dto with parameters of type VDJCLibraryData

Modifier and Type	Method and Description
int	VDJCLibraryData.compareTo(VDJCLibraryData o)
static void	VDJCDataUtils.sort(VDJCLibraryData library) Sort records inside library
static void	VDJCDataUtils.sort(VDJCLibraryData[] libraries) Sort libraries and genes inside them.
static void	VDJCDataUtils.writeToFile(VDJCLibraryData[] data, Path file, boolean compact)
static void	VDJCDataUtils.writeToFile(VDJCLibraryData[] data, String file, boolean compact)

Method parameters in io.repseq.dto with type arguments of type VDJCLibraryData

Modifier and Type	Method and Description
static VDJCLibraryData[]	VDJCDataUtils.merge(List<VDJCLibraryData> libraries) Merges VDJCLibraryData objects for the same species into single object.
static void	VDJCDataUtils.sort(List<VDJCLibraryData> libraries) Sort libraries and genes inside them.
static void	VDJCDataUtils.writeToFile(List<VDJCLibraryData> data, Path file, boolean compact)
static void	VDJCDataUtils.writeToFile(List<VDJCLibraryData> data, String file, boolean compact)

Constructors in io.repseq.dto with parameters of type VDJCLibraryData

Constructor and Description
VDJCLibraryData(VDJCLibraryData other, List<VDJCGeneData> genes) Creates VDJCLibraryData object from other VDJCLibraryData given new sed of genes