| Package | Description |
|---|---|
| io.repseq.core | |
| io.repseq.dto |
| Modifier and Type | Method and Description |
|---|---|
VDJCGeneData |
VDJCGene.getData()
Returns serializable gene data
|
| Modifier and Type | Method and Description |
|---|---|
static VDJCGene |
VDJCLibrary.addGene(VDJCLibrary library,
VDJCGeneData geneData)
Creates full featured VDJCGene object from VDJCGene DTO object, and adds it to VDJCLibrary
|
| Constructor and Description |
|---|
VDJCGene(VDJCLibrary parentLibrary,
VDJCGeneData data,
com.milaboratory.core.sequence.provider.SequenceProvider<com.milaboratory.core.sequence.NucleotideSequence> sequenceProvider,
ReferencePoints referencePoints)
Use
VDJCLibrary.addGene(VDJCLibrary, VDJCGeneData) to create instances of this object. |
| Modifier and Type | Method and Description |
|---|---|
VDJCGeneData |
VDJCGeneData.clone() |
| Modifier and Type | Method and Description |
|---|---|
List<VDJCGeneData> |
VDJCLibraryData.getGenes() |
| Modifier and Type | Method and Description |
|---|---|
int |
VDJCGeneData.compareTo(VDJCGeneData o) |
| Constructor and Description |
|---|
VDJCLibraryData(long taxonId,
List<String> speciesNames,
List<VDJCGeneData> genes,
List<VDJCLibraryNote> notes,
List<KnownSequenceFragmentData> sequenceFragments) |
VDJCLibraryData(VDJCLibraryData other,
List<VDJCGeneData> genes)
Creates VDJCLibraryData object from other VDJCLibraryData given new sed of genes
|
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