Uses of Class
io.repseq.dto.VDJCGeneData

Packages that use VDJCGeneData

Package	Description
io.repseq.core
io.repseq.dto

Uses of VDJCGeneData in io.repseq.core

Methods in io.repseq.core that return VDJCGeneData

Modifier and Type	Method and Description
VDJCGeneData	VDJCGene.getData() Returns serializable gene data

Methods in io.repseq.core with parameters of type VDJCGeneData

Modifier and Type	Method and Description
static VDJCGene	VDJCLibrary.addGene(VDJCLibrary library, VDJCGeneData geneData) Creates full featured VDJCGene object from VDJCGene DTO object, and adds it to VDJCLibrary

Constructors in io.repseq.core with parameters of type VDJCGeneData

Constructor and Description
VDJCGene(VDJCLibrary parentLibrary, VDJCGeneData data, com.milaboratory.core.sequence.provider.SequenceProvider<com.milaboratory.core.sequence.NucleotideSequence> sequenceProvider, ReferencePoints referencePoints) Use VDJCLibrary.addGene(VDJCLibrary, VDJCGeneData) to create instances of this object.

Uses of VDJCGeneData in io.repseq.dto

Methods in io.repseq.dto that return VDJCGeneData

Modifier and Type	Method and Description
VDJCGeneData	VDJCGeneData.clone()

Methods in io.repseq.dto that return types with arguments of type VDJCGeneData

Modifier and Type	Method and Description
List<VDJCGeneData>	VDJCLibraryData.getGenes()

Methods in io.repseq.dto with parameters of type VDJCGeneData

Modifier and Type	Method and Description
int	VDJCGeneData.compareTo(VDJCGeneData o)

Constructor parameters in io.repseq.dto with type arguments of type VDJCGeneData

Constructor and Description
VDJCLibraryData(long taxonId, List<String> speciesNames, List<VDJCGeneData> genes, List<VDJCLibraryNote> notes, List<KnownSequenceFragmentData> sequenceFragments)
VDJCLibraryData(VDJCLibraryData other, List<VDJCGeneData> genes) Creates VDJCLibraryData object from other VDJCLibraryData given new sed of genes