io.repseq.dto

Class VDJCLibraryData

java.lang.Object

io.repseq.dto.VDJCLibraryData

All Implemented Interfaces:

Comparable<VDJCLibraryData>

public final class VDJCLibraryData
extends Object
implements Comparable<VDJCLibraryData>

Constructor Summary

Constructors

Constructor and Description
VDJCLibraryData(long taxonId, List<String> speciesNames, List<VDJCGeneData> genes, List<VDJCLibraryNote> notes, List<KnownSequenceFragmentData> sequenceFragments)
VDJCLibraryData(VDJCLibraryData other, List<VDJCGeneData> genes) Creates VDJCLibraryData object from other VDJCLibraryData given new sed of genes

Method Summary

Methods

Modifier and Type	Method and Description
int	compareTo(VDJCLibraryData o)
boolean	equals(Object o)
List<VDJCLibraryNote>	getComments(VDJCLibraryNoteType type) Return notes of a particular type
List<VDJCGeneData>	getGenes()
List<VDJCLibraryNote>	getNotes()
List<KnownSequenceFragmentData>	getSequenceFragments()
List<String>	getSpeciesNames()
long	getTaxonId()
int	hashCode()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VDJCLibraryData

public VDJCLibraryData(VDJCLibraryData other,
               List<VDJCGeneData> genes)

Creates VDJCLibraryData object from other VDJCLibraryData given new sed of genes

Parameters:

other - VDJCLibraryData to clone properties from

genes - new gene list

VDJCLibraryData

public VDJCLibraryData(long taxonId,
               List<String> speciesNames,
               List<VDJCGeneData> genes,
               List<VDJCLibraryNote> notes,
               List<KnownSequenceFragmentData> sequenceFragments)

Method Detail

getTaxonId

public long getTaxonId()

getSpeciesNames

public List<String> getSpeciesNames()

getGenes

public List<VDJCGeneData> getGenes()

getNotes

public List<VDJCLibraryNote> getNotes()

getComments

public List<VDJCLibraryNote> getComments(VDJCLibraryNoteType type)

Return notes of a particular type

Parameters:

type - comment type

Returns:

list of notes of a particular type

getSequenceFragments

public List<KnownSequenceFragmentData> getSequenceFragments()

compareTo

public int compareTo(VDJCLibraryData o)

Specified by:

compareTo in interface Comparable<VDJCLibraryData>

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object