public class VDJCGeneData extends Object implements Comparable<VDJCGeneData>
| Constructor and Description |
|---|
VDJCGeneData(BaseSequence baseSequence,
String name,
GeneType geneType,
boolean isFunctional,
Chains chains,
String note,
Set<GeneTag> tags,
SortedMap<ReferencePoint,Long> anchorPoints) |
| Modifier and Type | Method and Description |
|---|---|
VDJCGeneData |
clone() |
int |
compareTo(VDJCGeneData o) |
boolean |
equals(Object o) |
Map<ReferencePoint,Long> |
getAnchorPoints() |
BaseSequence |
getBaseSequence() |
Chains |
getChains() |
String |
getFamilyName()
Gene family name (e.g.
|
String |
getGeneName()
Name without allele index (e.g.
|
GeneType |
getGeneType() |
String |
getName()
Full gene name
|
EnumSet<GeneTag> |
getTags() |
int |
hashCode() |
boolean |
isFunctional() |
public VDJCGeneData(BaseSequence baseSequence, String name, GeneType geneType, boolean isFunctional, Chains chains, String note, Set<GeneTag> tags, SortedMap<ReferencePoint,Long> anchorPoints)
public BaseSequence getBaseSequence()
public String getName()
public String getGeneName()
public String getFamilyName()
public GeneType getGeneType()
public boolean isFunctional()
public Chains getChains()
public Map<ReferencePoint,Long> getAnchorPoints()
public VDJCGeneData clone()
public int compareTo(VDJCGeneData o)
compareTo in interface Comparable<VDJCGeneData>Copyright © 2017. All rights reserved.