io.repseq.dto

Enum GeneTag

java.lang.Object

java.lang.Enum<GeneTag>

io.repseq.dto.GeneTag

All Implemented Interfaces:

Serializable, Comparable<GeneTag>

public enum GeneTag
extends Enum<GeneTag>

Manually or automatically attached gene annotation tag.

Enum Constant Summary

Enum Constants

Enum Constant and Description
Incomplete
NoCys
NoTrpPhe
Pseudo
Stops

Method Summary

Methods

Modifier and Type	Method and Description
boolean	isSupportedGeneType(GeneType geneType)
static GeneTag	valueOf(String name) Returns the enum constant of this type with the specified name.
static GeneTag[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

Pseudo

@Doc(value="Pseudo-gene. Some essential feature of gene sequence is absent or broken: stop codon in reading frame, absent recombination or splicing site, etc...")
public static final GeneTag Pseudo

Stops

@Doc(value="Stop codon in reading frame.")
public static final GeneTag Stops

NoTrpPhe

@Doc(value="Broken conserved Phe/Trp in J gene.")
public static final GeneTag NoTrpPhe

NoCys

@Doc(value="Broken conserved Cys in V gene.")
public static final GeneTag NoCys

Incomplete

@Doc(value="Some anchor points are not defined for the gene.")
public static final GeneTag Incomplete

Method Detail

values

public static GeneTag[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (GeneTag c : GeneTag.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static GeneTag valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name

NullPointerException - if the argument is null

isSupportedGeneType

public boolean isSupportedGeneType(GeneType geneType)