io.repseq.core

Interfaces

• VDJCLibraryRegistry.AliasResolver
• VDJCLibraryRegistry.LibraryNameListProvider
• VDJCLibraryRegistry.LibraryResolver

Classes

• AbstractReferencePoints
• AbstractReferencePointsBuilder
• BaseSequence
• BaseSequence.Deserializer
• BaseSequence.Serializer
• Chains
• ExtendedReferencePoints
• ExtendedReferencePointsBuilder
• GeneFeature
• GeneFeature.Deserializer
• GeneFeature.ReferenceRange
• GeneFeature.Serializer
• GeneFeatureSerializer
• GeneType.Deserializer
• GeneType.Serializer
• PartitionedSequence
• PartitionedSequenceCached
• ReferencePoint
• ReferencePoint.Deserializer
• ReferencePoint.JsonKeyDeserializer
• ReferencePoint.JsonKeySerializer
• ReferencePoint.Serializer
• ReferencePoints
• ReferencePoints.JDeserializer
• ReferencePoints.JSerializer
• ReferencePointsBuilder
• ReferenceUtil
• SequencePartitioning
• SequenceProviderAndReferencePoints
• VDJCGene
• VDJCGeneId
• VDJCLibrary
• VDJCLibraryId
• VDJCLibraryRegistry
• VDJCLibraryRegistry.ClasspathLibraryResolver
• VDJCLibraryRegistry.FolderLibraryResolver

Enums

• GeneType

Exceptions

• GeneNotFoundException