Uses of Class
io.repseq.core.VDJCLibraryId

Packages that use VDJCLibraryId

Package	Description
io.repseq.core
io.repseq.gen.dist

Uses of VDJCLibraryId in io.repseq.core

Methods in io.repseq.core that return VDJCLibraryId

Modifier and Type	Method and Description
static VDJCLibraryId	VDJCLibraryId.decode(String str) Return VDJCLibraryId object from string representation returned by toString().
VDJCLibraryId	VDJCLibrary.getLibraryId() Returns identifier of this library
VDJCLibraryId	VDJCGeneId.getLibraryId()
VDJCLibraryId	VDJCLibraryId.setLibraryName(String newLibraryName) Return new instance of VDJCLibraryId with different library name
VDJCLibraryId	VDJCLibraryId.withoutChecksum() Returns copy of this VDJCLibraryId with checksum set to null

Methods in io.repseq.core with parameters of type VDJCLibraryId

Modifier and Type	Method and Description
int	VDJCLibraryId.compareTo(VDJCLibraryId o)
VDJCLibrary	VDJCLibraryRegistry.getLibrary(VDJCLibraryId libraryId) Returns library with specified name and specified species.

Constructors in io.repseq.core with parameters of type VDJCLibraryId

Constructor and Description
VDJCGeneId(VDJCLibraryId libraryId, String geneName)

Uses of VDJCLibraryId in io.repseq.gen.dist

Fields in io.repseq.gen.dist declared as VDJCLibraryId

Modifier and Type	Field and Description
VDJCLibraryId	BasicGCloneModel.vdjcLibrary

Methods in io.repseq.gen.dist that return VDJCLibraryId

Modifier and Type	Method and Description
VDJCLibraryId	GCloneModel.libraryId()
VDJCLibraryId	BasicGCloneModel.libraryId()

Constructors in io.repseq.gen.dist with parameters of type VDJCLibraryId

Constructor and Description
BasicGCloneModel(VDJCLibraryId vdjcLibrary, IndependentRealModel abundanceModel, Map<String,GGeneModel> geneModels)