io.repseq.core

Class PartitionedSequence<S extends com.milaboratory.core.sequence.Seq<S>>

java.lang.Object

io.repseq.core.PartitionedSequence<S>

Direct Known Subclasses:

PartitionedSequenceCached

public abstract class PartitionedSequence<S extends com.milaboratory.core.sequence.Seq<S>>
extends Object

Author:

Dmitry Bolotin, Stanislav Poslavsky

Constructor Summary

Constructors

Constructor and Description
PartitionedSequence()

Method Summary

Methods

Modifier and Type	Method and Description
S	getFeature(GeneFeature feature)
protected abstract SequencePartitioning	getPartitioning()
protected abstract S	getSequence(com.milaboratory.core.Range range)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PartitionedSequence

public PartitionedSequence()

Method Detail

getSequence

protected abstract S getSequence(com.milaboratory.core.Range range)

getPartitioning

protected abstract SequencePartitioning getPartitioning()

getFeature

public S getFeature(GeneFeature feature)