Chains (RepSeqIO 1.2.8 API)

java.lang.Object
- io.repseq.core.Chains

All Implemented Interfaces:: Iterable<String>

public final class Chains
extends Object
implements Iterable<String>

Immutable set of strings

Field Summary

Fields
Modifier and Type	Field and Description
`static Chains`	`ALL` Special chains object represents all possible alleles.
`static Chains`	`EMPTY`
`static Chains`	`IG`
`static Chains`	`IGH`
`static Chains`	`IGK`
`static Chains`	`IGL`
`static Chains`	`TCR`
`static Chains`	`TRA`
`static Chains`	`TRB`
`static Chains`	`TRD`
`static Chains`	`TRG`

Constructor Summary

Constructors
Constructor and Description

Chains(Set<String> chains)

Chains(String... chains)

Constructors
Constructor and Description
`Chains(Set<String> chains)`
`Chains(String... chains)`

Method Summary

Methods
Modifier and Type	Method and Description
`boolean`	`contains(String chain)`
`boolean`	`equals(Object o)`
`int`	`hashCode()`
`Chains`	`intersection(Chains other)`
`boolean`	`intersects(Chains other)`
`boolean`	`isEmpty()`
`Iterator<String>`	`iterator()`
`Chains`	`merge(Chains other)`
`static Chains`	`parse(String value)` Parse chains including TCR, TR, IG and ALL abbreviations, can parse coma-separated list.
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

ALL
```
public static final Chains ALL
```
Special chains object represents all possible alleles.

EMPTY
```
public static final Chains EMPTY
```

TRA
```
public static final Chains TRA
```

TRB
```
public static final Chains TRB
```

TRG
```
public static final Chains TRG
```

TRD
```
public static final Chains TRD
```

TCR
```
public static final Chains TCR
```

IGH
```
public static final Chains IGH
```

IGK
```
public static final Chains IGK
```

IGL
```
public static final Chains IGL
```

IG
```
public static final Chains IG
```

Constructor Detail

Chains
```
public Chains(String... chains)
```

Chains
```
public Chains(Set<String> chains)
```

Method Detail
- iterator
```
public Iterator<String> iterator()
```
  Specified by:
  
  iterator in interface Iterable<String>
- merge
```
public Chains merge(Chains other)
```
- intersection
```
public Chains intersection(Chains other)
```
- isEmpty
```
public boolean isEmpty()
```
- contains
```
public boolean contains(String chain)
```
- intersects
```
public boolean intersects(Chains other)
```
- parse
```
public static Chains parse(String value)
```
  Parse chains including TCR, TR, IG and ALL abbreviations, can parse coma-separated list. Example: "TR", "TCR,IGH"
  
  Parameters:
  value - string representation
- equals
```
public boolean equals(Object o)
```
  Overrides:
  
  equals in class Object
- hashCode
```
public int hashCode()
```
  Overrides:
  
  hashCode in class Object
- toString
```
public String toString()
```
  Overrides:
  
  toString in class Object

Class Chains

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

ALL

EMPTY

TRA

TRB

TRG

TRD

TCR

IGH

IGK

IGL

IG

Constructor Detail

Chains

Chains

Method Detail

iterator

merge

intersection

isEmpty

contains

intersects

parse

equals

hashCode

toString