io.repseq.cli

Class TsvAction.Params

java.lang.Object

com.milaboratory.cli.ActionParameters

com.milaboratory.cli.ActionParametersWithOutput

io.repseq.cli.TsvAction.Params

Enclosing class:

TsvAction

public static final class TsvAction.Params
extends com.milaboratory.cli.ActionParametersWithOutput

Field Summary

Fields

Modifier and Type	Field and Description
String	chain
List<CLIUtils.GeneFeatureWithOriginalName>	features
String	name
Boolean	oneBased
List<String>	parameters
String	species
Long	taxonId

Fields inherited from class com.milaboratory.cli.ActionParametersWithOutput

force

Fields inherited from class com.milaboratory.cli.ActionParameters

help

Constructor Summary

Constructors

Constructor and Description
TsvAction.Params()

Method Summary

Methods

Modifier and Type	Method and Description
String	getInput()
protected List<String>	getOutputFiles()
OutputStream	getOutputStream()
boolean	isOneBased()

Methods inherited from class com.milaboratory.cli.ActionParametersWithOutput

isForceOverwrite, validate

Methods inherited from class com.milaboratory.cli.ActionParameters

help

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

parameters

public List<String> parameters

taxonId

public Long taxonId

species

public String species

chain

public String chain

name

public String name

oneBased

public Boolean oneBased

features

public List<CLIUtils.GeneFeatureWithOriginalName> features

Constructor Detail

TsvAction.Params

public TsvAction.Params()

Method Detail

isOneBased

public boolean isOneBased()

getInput

public String getInput()

getOutputStream

public OutputStream getOutputStream()
                             throws FileNotFoundException

Throws:

FileNotFoundException

getOutputFiles

protected List<String> getOutputFiles()

Specified by:

getOutputFiles in class com.milaboratory.cli.ActionParametersWithOutput