io.repseq.cli

Class FastaAction.Params

java.lang.Object

com.milaboratory.cli.ActionParameters

com.milaboratory.cli.ActionParametersWithOutput

io.repseq.cli.FastaAction.Params

Enclosing class:

FastaAction

public static final class FastaAction.Params
extends com.milaboratory.cli.ActionParametersWithOutput

Field Summary

Fields

Modifier and Type	Field and Description
String	chain
String	feature
String	name
List<String>	parameters
String	species
Long	taxonId

Fields inherited from class com.milaboratory.cli.ActionParametersWithOutput

force

Fields inherited from class com.milaboratory.cli.ActionParameters

help

Constructor Summary

Constructors

Constructor and Description
FastaAction.Params()

Method Summary

Methods

Modifier and Type	Method and Description
GeneFeature	getGeneFeature()
String	getInput()
String	getOutput()
protected List<String>	getOutputFiles()

Methods inherited from class com.milaboratory.cli.ActionParametersWithOutput

isForceOverwrite, validate

Methods inherited from class com.milaboratory.cli.ActionParameters

help

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

parameters

public List<String> parameters

taxonId

public Long taxonId

species

public String species

chain

public String chain

name

public String name

feature

public String feature

Constructor Detail

FastaAction.Params

public FastaAction.Params()

Method Detail

getGeneFeature

public GeneFeature getGeneFeature()

getInput

public String getInput()

getOutput

public String getOutput()

getOutputFiles

protected List<String> getOutputFiles()

Specified by:

getOutputFiles in class com.milaboratory.cli.ActionParametersWithOutput