io.repseq.cli

Class CLIUtils

java.lang.Object

io.repseq.cli.CLIUtils

public final class CLIUtils
extends Object

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	CLIUtils.GeneFeatureConverter
static class	CLIUtils.GeneFeatureSplitter
static class	CLIUtils.GeneFeatureValidator
static class	CLIUtils.GeneFeatureWithOriginalName Represents pair of gene feature object along with original string representation specified by user.

Method Summary

Methods

Modifier and Type	Method and Description
static BufferedOutputStream	createBufferedOutputStream(String fileName)
static BufferedReader	createBufferedReader(String fileName)
static com.milaboratory.core.io.sequence.fasta.FastaWriter<com.milaboratory.core.sequence.NucleotideSequence>	createSingleFastaWriter(String fileName)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

createBufferedReader

public static BufferedReader createBufferedReader(String fileName)
                                           throws IOException

Throws:

IOException

createBufferedOutputStream

public static BufferedOutputStream createBufferedOutputStream(String fileName)
                                                       throws IOException

Throws:

IOException

createSingleFastaWriter

public static com.milaboratory.core.io.sequence.fasta.FastaWriter<com.milaboratory.core.sequence.NucleotideSequence> createSingleFastaWriter(String fileName)
                                                                                                                                      throws IOException

Throws:

IOException