All Classes
AbstractRAFastaResolver
AbstractReferencePoints
AbstractReferencePointsBuilder
AnySequenceResolver
BaseSequence
BaseSequence.Deserializer
BaseSequence.Serializer
BasicGCloneModel
BasicGGeneModel
CategoricalIndependentIntModel
Chains
CheckAction
CheckAction.Params
CLIUtils
CLIUtils.GeneFeatureConverter
CLIUtils.GeneFeatureSplitter
CLIUtils.GeneFeatureValidator
CLIUtils.GeneFeatureWithOriginalName
CommonCategoricalDGeneTrimmingModel
CommonCategoricalGeneTrimmingModel
CommonNormalDTrimmingModel
CommonNormalGeneTrimmingModel
CompileAction
CompileAction.Params
CompileLibraryMavenStage
ConcatenatedLazySequence
DebugAction
DebugAction.Params
DJCDependentVDJCGenesModel
DJCDependentVDJCGenesModel.VDJCGene3
DJDependentVDJCGenesModel
DJDependentVDJCGenesModel.VDJCGene2
Doc
DoubleTensor
DTrimming
DTrimmingGenerator
DTrimmingModel
ExportCloneSequencesAction
ExportCloneSequencesAction.Params
ExtendedReferencePoints
ExtendedReferencePointsBuilder
FastaAction
FastaAction.Params
FilterAction
FilterAction.Params
FixedInsertModel
FixedRealModel
FormatAction
FormatAction.Params
FromPaddedFastaAction
FromPaddedFastaAction.Params
GClone
GCloneGenerator
GCloneModel
GeneFeature
GeneFeature.Deserializer
GeneFeature.ReferenceRange
GeneFeature.Serializer
GeneFeatureSerializer
GeneNotFoundException
GenerateClonesAction
GenerateClonesAction.Params
GeneTag
GeneTrimmingGenerator
GeneTrimmingGeneratorEnumerated
GeneTrimmingModel
GeneType
GeneType.Deserializer
GeneType.Serializer
GGene
GGeneGenerator
GGeneModel
GModels
GRepertoire
GRepertoireReader
GRepertoireWriter
HTTPFastaSequenceResolver
HTTPRedirectSequenceResolver
HTTPResolversContext
HTTPSequenceResolvers
HTTPSequenceResolvers.NucCoreResolver
IndependentIntGenerator
IndependentIntModel
IndependentRealGenerator
IndependentRealModel
IndependentVDJCGenesModel
IndependentVDJTrimmingModel
InferAnchorPointsAction
InferAnchorPointsAction.Params
InsertGenerator
InsertModel
KnownSequenceFragmentData
ListAction
ListAction.Params
LocalFileResolver
Main
MarkovInsertModel
MarkovInsertModel.Model3
MarkovInsertModel.Model5
MergeAction
MergeAction.Params
Model
ModifyLibraryAction
MultiSequenceResolver
NormalDistributionParameters
NormalizeCloneAbundancesAction
NormalizeCloneAbundancesAction.Params
OptionalSequenceResolver
ParentAwareResolver
ParetoModel
PartitionedSequence
PartitionedSequenceCached
ReferencePoint
ReferencePoint.Deserializer
ReferencePoint.JsonKeyDeserializer
ReferencePoint.JsonKeySerializer
ReferencePoint.Serializer
ReferencePoints
ReferencePoints.JDeserializer
ReferencePoints.JSerializer
ReferencePointsBuilder
ReferenceUtil
SeparateCategoricalDGeneTrimmingModel
SeparateCategoricalGeneTrimmingModel
SequenceAddress
SequenceBase
SequencePartitioning
SequenceProviderAndReferencePoints
SequenceResolver
SequenceResolvers
StatAction
StatAction.Params
StringWithMapping
TsvAction
TsvAction.NameAndGeneFeature
TsvAction.Params
VDJCDataUtils
VDJCDataUtils.FragmentsBuilder
VDJCGene
VDJCGeneData
VDJCGeneId
VDJCGenes
VDJCGenesGenerator
VDJCGenesModel
VDJCLibrary
VDJCLibraryData
VDJCLibraryId
VDJCLibraryNote
VDJCLibraryNoteType
VDJCLibraryRegistry
VDJCLibraryRegistry.AliasResolver
VDJCLibraryRegistry.ClasspathLibraryResolver
VDJCLibraryRegistry.FolderLibraryResolver
VDJCLibraryRegistry.LibraryNameListProvider
VDJCLibraryRegistry.LibraryResolver
VDJCUsageDistribution
VDJCUsageDistributionInstance
VDJTrimming
VDJTrimmingGenerator
VDJTrimmingModel