de.isas.mztab2.validation

Class CvMappingValidator

java.lang.Object

de.isas.mztab2.validation.CvMappingValidator

All Implemented Interfaces:

Validator<MzTab>

public class CvMappingValidator
extends Object
implements Validator<MzTab>

Validator implementation that uses a provided xml mapping file with rules for required, recommended and optional CV parameters to assert that an mzTab follows these rules.

Author:

nilshoffmann

Constructor Summary

Constructors

Constructor and Description
CvMappingValidator()

Method Summary

Modifier and Type	Method and Description
static CvMappingValidator	of(info.psidev.cvmapping.CvMapping mapping, CvParameterLookupService client, boolean errorIfTermNotInRule)
static CvMappingValidator	of(File mappingFile, boolean errorIfTermNotInRule)
static CvMappingValidator	of(File mappingFile, CvParameterLookupService client, boolean errorIfTermNotInRule)
static CvMappingValidator	of(URL mappingFile, boolean errorIfTermNotInRule)
static CvMappingValidator	of(URL mappingFile, CvParameterLookupService client, boolean errorIfTermNotInRule)
List<ValidationMessage>	validate(MzTab mzTab)
CvMappingValidator	withPostValidator(Validator<MzTab> postValidator)
CvMappingValidator	withPreValidator(Validator<MzTab> preValidator)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CvMappingValidator

public CvMappingValidator()

Method Detail

of

public static CvMappingValidator of(File mappingFile,
                                    boolean errorIfTermNotInRule)
                             throws JAXBException

Throws:

JAXBException

of

public static CvMappingValidator of(File mappingFile,
                                    CvParameterLookupService client,
                                    boolean errorIfTermNotInRule)
                             throws JAXBException

Throws:

JAXBException

withPreValidator

public CvMappingValidator withPreValidator(Validator<MzTab> preValidator)

withPostValidator

public CvMappingValidator withPostValidator(Validator<MzTab> postValidator)

of

public static CvMappingValidator of(URL mappingFile,
                                    boolean errorIfTermNotInRule)
                             throws JAXBException

Throws:

JAXBException

of

public static CvMappingValidator of(URL mappingFile,
                                    CvParameterLookupService client,
                                    boolean errorIfTermNotInRule)
                             throws JAXBException

Throws:

JAXBException

of

public static CvMappingValidator of(info.psidev.cvmapping.CvMapping mapping,
                                    CvParameterLookupService client,
                                    boolean errorIfTermNotInRule)

validate

public List<ValidationMessage> validate(MzTab mzTab)

Specified by:

validate in interface Validator<MzTab>