de.isas.mztab2.cvmapping

Class CvParameterLookupService

java.lang.Object

de.isas.mztab2.cvmapping.CvParameterLookupService

public class CvParameterLookupService
extends Object

Abstraction over OLSClient to autoconvert Terms to Parameters and to allow easy matching of Parameters against parent terms and their children.

Author:

nilshoffmann

Constructor Summary

Constructors

Constructor and Description
CvParameterLookupService()
CvParameterLookupService(uk.ac.ebi.pride.utilities.ols.web.service.client.OLSClient client)
CvParameterLookupService(uk.ac.ebi.pride.utilities.ols.web.service.config.OLSWsConfig config)

Method Summary

Modifier and Type	Method and Description
void	clearCaches()
ParameterComparisonResult	isChildOfOrSame(Parameter parent, Parameter potentialChild)
List<Parameter>	resolveChildren(Parameter parameter)
List<Parameter>	resolveChildren(Parameter parameter, int levels)
List<Parameter>	resolveParents(Parameter parameter)
List<Parameter>	resolveParents(Parameter parameter, int levels)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CvParameterLookupService

public CvParameterLookupService()

CvParameterLookupService

public CvParameterLookupService(uk.ac.ebi.pride.utilities.ols.web.service.client.OLSClient client)

CvParameterLookupService

public CvParameterLookupService(uk.ac.ebi.pride.utilities.ols.web.service.config.OLSWsConfig config)

Method Detail

clearCaches

public void clearCaches()

resolveParents

public List<Parameter> resolveParents(Parameter parameter)
                               throws org.springframework.web.client.HttpClientErrorException

Throws:

org.springframework.web.client.HttpClientErrorException

resolveParents

public List<Parameter> resolveParents(Parameter parameter,
                                      int levels)
                               throws org.springframework.web.client.HttpClientErrorException

Throws:

org.springframework.web.client.HttpClientErrorException

resolveChildren

public List<Parameter> resolveChildren(Parameter parameter,
                                       int levels)
                                throws org.springframework.web.client.HttpClientErrorException

Throws:

org.springframework.web.client.HttpClientErrorException

resolveChildren

public List<Parameter> resolveChildren(Parameter parameter)
                                throws org.springframework.web.client.HttpClientErrorException

Throws:

org.springframework.web.client.HttpClientErrorException

isChildOfOrSame

public ParameterComparisonResult isChildOfOrSame(Parameter parent,
                                                 Parameter potentialChild)
                                          throws org.springframework.web.client.HttpClientErrorException

Throws:

org.springframework.web.client.HttpClientErrorException