de.isas.mztab2.cvmapping

Class CvMappingUtils

java.lang.Object

de.isas.mztab2.cvmapping.CvMappingUtils

public class CvMappingUtils
extends Object

Utility methods for conversion between the mapping file domain and the mzTab domain.

Author:

nilshoffmann

Constructor Summary

Constructors

Constructor and Description
CvMappingUtils()

Method Summary

Modifier and Type	Method and Description
static Parameter	asParameter(info.psidev.cvmapping.CvTerm term)
static Parameter	asParameter(uk.ac.ebi.pride.utilities.ols.web.service.model.Term term)
static boolean	isEqualTo(Parameter one, Parameter two)
static boolean	isEqualTo(uk.ac.ebi.pride.utilities.ols.web.service.model.Term term, Parameter param)
static String	niceToString(info.psidev.cvmapping.CvMappingRule rule)
static MZTabErrorType.Level	toErrorLevel(info.psidev.cvmapping.CvMappingRule.RequirementLevel requirementLevel)
static String	toString(info.psidev.cvmapping.CvMappingRule rule)
static String	toString(List<info.psidev.cvmapping.CvTerm> terms)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CvMappingUtils

public CvMappingUtils()

Method Detail

toErrorLevel

public static MZTabErrorType.Level toErrorLevel(info.psidev.cvmapping.CvMappingRule.RequirementLevel requirementLevel)

niceToString

public static String niceToString(info.psidev.cvmapping.CvMappingRule rule)

toString

public static String toString(info.psidev.cvmapping.CvMappingRule rule)

toString

public static String toString(List<info.psidev.cvmapping.CvTerm> terms)

isEqualTo

public static boolean isEqualTo(uk.ac.ebi.pride.utilities.ols.web.service.model.Term term,
                                Parameter param)

asParameter

public static Parameter asParameter(uk.ac.ebi.pride.utilities.ols.web.service.model.Term term)

isEqualTo

public static boolean isEqualTo(Parameter one,
                                Parameter two)

asParameter

public static Parameter asParameter(info.psidev.cvmapping.CvTerm term)