Package uk.ac.ebi.pride.jmztab2.utils.errors

Class FormatErrorType

java.lang.Object

uk.ac.ebi.pride.jmztab2.utils.errors.MZTabErrorType

uk.ac.ebi.pride.jmztab2.utils.errors.FormatErrorType

All Implemented Interfaces:

java.io.Serializable

public final class FormatErrorType
extends MZTabErrorType

Diagnose different types of format-related (reporting format problems). Reference: http://code.google.com/p/mztab/wiki/jmzTab_message for details.

Since:

29/01/13

Author:

qingwei

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class uk.ac.ebi.pride.jmztab2.utils.errors.MZTabErrorType

MZTabErrorType.Category, MZTabErrorType.Level

Field Summary

Fields

Modifier and Type	Field	Description
static MZTabErrorType	AbundanceColumn	Constant AbundanceColumn
static MZTabErrorType	CHEMMODSAccession	Constant CHEMMODSAccession
static MZTabErrorType	ColUnit	Constant ColUnit
static MZTabErrorType	CountMatch	Constant CountMatch
static MZTabErrorType	Double	Constant Double
static MZTabErrorType	DoubleList	Constant DoubleList
static MZTabErrorType	Email	Constant Email
static MZTabErrorType	GOTermList	Constant GOTermList
static MZTabErrorType	IndexedElement	Constant IndexedElement
static MZTabErrorType	Integer	Constant Integer
static MZTabErrorType	IntegerList	Constant IntegerList
static MZTabErrorType	InvalidColunitFormat	Constant InvalidColunitFormat
static MZTabErrorType	LinePrefix	Constant LinePrefix
static MZTabErrorType	ModificationList	Constant ModificationList
static MZTabErrorType	MsRunOptionalColumn	Constant MsRunOptionalColumn
static MZTabErrorType	MTDDefineLabel	Constant MTDDefineLabel
static MZTabErrorType	MTDLine	Constant MTDLine
static MZTabErrorType	MZBoolean	Constant MZBoolean
static MZTabErrorType	MZTabId	Constant MZTabType
static MZTabErrorType	MZTabMode	Constant MZTabMode
static MZTabErrorType	MZTabType	Constant MZTabType
static MZTabErrorType	MZTabVersion	Constant MZTabVersion
static MZTabErrorType	OptionalCVParamColumn	Constant OptionalCVParamColumn
static MZTabErrorType	Param	Constant Param
static MZTabErrorType	ParamAccessionNotNamespaced	Constant ParamAccessionNotNamespaced
static MZTabErrorType	ParamList	Constant ParamList
static MZTabErrorType	Publication	Constant Publication
static MZTabErrorType	RegexMismatch	Constant RegexMismatch
static MZTabErrorType	Reliability	Constant Reliability
static MZTabErrorType	SearchEngineScore	Constant SearchEngineScore
static MZTabErrorType	Sequence	Constant Sequence
static MZTabErrorType	SpectraRef	Constant SpectraRef
static MZTabErrorType	StableColumn	Constant StableColumn
static MZTabErrorType	StringList	Constant StringList
static MZTabErrorType	URI	Constant URI
static MZTabErrorType	URL	Constant URL

Method Summary

Modifier and Type	Method	Description
static MZTabErrorType[]	getValues()

Methods inherited from class uk.ac.ebi.pride.jmztab2.utils.errors.MZTabErrorType

createError, createInfo, createWarn, equals, findLevel, forLevel, getCategory, getCause, getCode, getLevel, getOriginal, hashCode, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

LinePrefix

public static final MZTabErrorType LinePrefix

Constant LinePrefix

CountMatch

public static final MZTabErrorType CountMatch

Constant CountMatch

IndexedElement

public static final MZTabErrorType IndexedElement

Constant IndexedElement

AbundanceColumn

public static final MZTabErrorType AbundanceColumn

Constant AbundanceColumn

MsRunOptionalColumn

public static final MZTabErrorType MsRunOptionalColumn

Constant MsRunOptionalColumn

OptionalCVParamColumn

public static final MZTabErrorType OptionalCVParamColumn

Constant OptionalCVParamColumn

StableColumn

public static final MZTabErrorType StableColumn

Constant StableColumn

MTDLine

public static final MZTabErrorType MTDLine

Constant MTDLine

MTDDefineLabel

public static final MZTabErrorType MTDDefineLabel

Constant MTDDefineLabel

MZTabMode

public static final MZTabErrorType MZTabMode

Constant MZTabMode

MZTabType

public static final MZTabErrorType MZTabType

Constant MZTabType

MZTabId

public static final MZTabErrorType MZTabId

Constant MZTabType

MZTabVersion

public static final MZTabErrorType MZTabVersion

Constant MZTabVersion

Param

public static final MZTabErrorType Param

Constant Param

ParamList

public static final MZTabErrorType ParamList

Constant ParamList

Publication

public static final MZTabErrorType Publication

Constant Publication

URI

public static final MZTabErrorType URI

Constant URI

URL

public static final MZTabErrorType URL

Constant URL

Email

public static final MZTabErrorType Email

Constant Email

Integer

public static final MZTabErrorType Integer

Constant Integer

Double

public static final MZTabErrorType Double

Constant Double

Reliability

public static final MZTabErrorType Reliability

Constant Reliability

StringList

public static final MZTabErrorType StringList

Constant StringList

DoubleList

public static final MZTabErrorType DoubleList

Constant DoubleList

ModificationList

public static final MZTabErrorType ModificationList

Constant ModificationList

GOTermList

public static final MZTabErrorType GOTermList

Constant GOTermList

MZBoolean

public static final MZTabErrorType MZBoolean

Constant MZBoolean

SpectraRef

public static final MZTabErrorType SpectraRef

Constant SpectraRef

CHEMMODSAccession

public static final MZTabErrorType CHEMMODSAccession

Constant CHEMMODSAccession

SearchEngineScore

public static final MZTabErrorType SearchEngineScore

Constant SearchEngineScore

Sequence

public static final MZTabErrorType Sequence

Constant Sequence

ColUnit

public static final MZTabErrorType ColUnit

Constant ColUnit

IntegerList

public static final MZTabErrorType IntegerList

Constant IntegerList

RegexMismatch

public static final MZTabErrorType RegexMismatch

Constant RegexMismatch

ParamAccessionNotNamespaced

public static final MZTabErrorType ParamAccessionNotNamespaced

Constant ParamAccessionNotNamespaced

InvalidColunitFormat

public static final MZTabErrorType InvalidColunitFormat

Constant InvalidColunitFormat

Method Detail

getValues

public static MZTabErrorType[] getValues()