Package de.isas.mztab2.model

Class SpectraRef

  • @Generated(value="io.swagger.codegen.languages.JavaClientCodegen",
           date="2019-08-07T11:19:54.315+02:00")
public class SpectraRef
extends java.lang.Object
    Reference to a spectrum in a spectrum file, for example a fragmentation spectrum has been used to support the identification. If a separate spectrum file has been used for fragmentation spectrum, this MUST be reported in the metadata section as additional ms_runs. The reference must be in the format ms_run[1-n]:{SPECTRA_REF} where SPECTRA_REF MUST follow the format defined in 5.2 (including references to chromatograms where these are used to inform identification). Multiple spectra MUST be referenced using a “|” delimited list for the (rare) cases in which search engines have combined or aggregated multiple spectra in advance of the search to make identifications. If a fragmentation spectrum has not been used, the value should indicate the ms_run to which is identification is mapped e.g. “ms_run[1]”.

    mzTab-M specification example(s):

    SEH     SME_ID  …       spectra_ref     …
SME     1                       ms_run[1]:index=5       …

    • Nested Class Summary

      Nested Classes 
      Modifier and Type Class Description
      static class  SpectraRef.Properties
      Property enumeration for SpectraRef.

    • Constructor Summary

      Constructors 
      Constructor Description
      SpectraRef()  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      boolean equals​(java.lang.Object o)  
      @NotNull @Valid MsRun getMsRun()
      The ms run object reference by this spectral reference.
      @NotNull java.lang.String getReference()
      The (vendor-dependendent) reference string to the actual mass spectrum.
      int hashCode()  
      SpectraRef msRun​(MsRun msRun)
      Builder method for msRun.
      SpectraRef reference​(java.lang.String reference)
      Builder method for reference.
      void setMsRun​(MsRun msRun)
      Set msRun.
      void setReference​(java.lang.String reference)
      Set reference.
      java.lang.String toString()  

      • Methods inherited from class java.lang.Object

        clone, finalize, getClass, notify, notifyAll, wait, wait, wait