Constant Field Values

Contents

uk.ac.*

  • uk.ac.ebi.pride.jmztab2.model.MZTabConstants 
    Modifier and Type Constant Field Value
    public static final java.lang.String ABUNDANCE_PREFIX "abundance_"
    public static final char BAR 124
    public static final java.lang.String BAR_S "|"
    public static final java.lang.String CALCULATE_ERROR "NaN"
    public static final char COLON 58
    public static final char COMMA 44
    public static final java.lang.String CV_PREFIX "cv_"
    public static final java.lang.String GLOBAL "global"
    public static final java.lang.String INFINITY "INF"
    public static final char MINUS 45
    public static final java.lang.String NEW_LINE "\r\n"
    public static final java.lang.String NULL "null"
    public static final java.lang.String OPT_PREFIX "opt_"
    public static final java.lang.String REGEX_ABUNDANCE_ASSAY_COLUMN_NAME "assay\\[(\\d+)\\]"
    public static final java.lang.String REGEX_ABUNDANCE_COLUMN_NAME "abundance_(.+)"
    public static final java.lang.String REGEX_ADDUCT "^\\[\\d*M([+-][\\w\\d]+)*\\]\\d*[+-]$"
    public static final java.lang.String REGEX_CV_PARAM_OPT_COLUMN_NAME "cv(_([A-Za-z0-9\\-\\[\\]:\\.]+))?(_([A-Za-z0-9_\\-\\[\\]:\\.]+)*)"
    public static final java.lang.String REGEX_DEFAULT_RELIABILITY "[1234]{1}"
    public static final java.lang.String REGEX_EMAIL "[_A-Za-z0-9-]+(\\.[_A-Za-z0-9-\']+)*@[A-Za-z0-9]+(?:[-.][A-Za-z0-9]+)*(\\.[A-Za-z]{2,})"
    public static final java.lang.String REGEX_INDEXED_VALUE "\\[(\\d+)\\]"
    public static final java.lang.String REGEX_MZTAB_M "(?<major>[2]{1})\\.(?<minor>\\d{1})\\.(?<micro>\\d{1})-(?<profile>[M]{1})"
    public static final java.lang.String REGEX_NORMAL_METADATA "(\\w+)(\\[(\\w+)\\])?(-(\\w+)(\\[(\\w+)\\])?)?(-(\\w+))?"
    public static final java.lang.String REGEX_OPT_COLUMN_NAME "opt_((assay|study_variable|ms_run)\\[(\\w+)\\]|global)_([A-Za-z0-9_\\-\\[\\]:\\.]+)"
    public static final java.lang.String REGEX_PARAM_SPLIT ",(?=([^\"]*\"[^\"]*\")*[^\"]*$)"
    public static final java.lang.String REGEX_STUDY_VARIABLE_COLUMN_NAME "study_variable\\[(\\d+)\\]"
    public static final char TAB 9
    public static final java.lang.String TAB_STRING "\t"
    public static final java.lang.String VERSION_MZTAB_M "2.0.0-M"
  • uk.ac.ebi.pride.jmztab2.utils.MZTabProperties 
    Modifier and Type Constant Field Value
    public static final java.lang.String MZTAB_ERROR_OVERFLOW_EXCEPTION_MESSAGE "System error queue overflow!\r\n"
    public static final java.lang.String MZTAB_EXCEPTION_MESSAGE "There exist errors in the metadata section or protein/peptide/small_molecule/small_molecule_feature/small_molecule_evidence header section! Validation will stop, and ignore data table check!\r\n"
  • uk.ac.ebi.pride.jmztab2.utils.errors.MZTabConversionException 
    Modifier and Type Constant Field Value
    public static final java.lang.String ERROR_AMBIGUITY "mzTab do not support one protein in more than one ambiguity groups."