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object columns

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Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
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  2. final def ##(): Int
    Definition Classes
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  3. final def ==(arg0: Any): Boolean
    Definition Classes
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  4. val ac: Column
  5. val af: Column
  6. val afr_af: Column
  7. val alternate: Column
  8. val amino_acids: Column
  9. val amr_af: Column
  10. val an: Column
  11. val annotations: Column
  12. final def asInstanceOf[T0]: T0
    Definition Classes
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  13. val biotype: Column
  14. val calculate_an_lower_bound_kf: Column
  15. val calculate_an_upper_bound_kf: (Long) ⇒ Column
  16. val calculated_ac: Column
  17. val calculated_af: Column
  18. val calculated_af_from_an: (Column) ⇒ Column
  19. val calculated_duo_af: (String) ⇒ Column
  20. val cdna_position: Column
  21. val cds_position: Column
  22. val chromosome: Column
  23. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
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    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  24. val codons: Column
  25. val consequences: Column
  26. val csq: Column
  27. val dp: Column
  28. val eas_af: Column
  29. val end: Column
  30. val ensembl_feature_id: Column
  31. val ensembl_gene_id: Column
  32. val ensembl_regulatory_id: Column
  33. val ensembl_transcript_id: Column
  34. final def eq(arg0: AnyRef): Boolean
    Definition Classes
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  35. def equals(arg0: Any): Boolean
    Definition Classes
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  36. val eur_af: Column
  37. val exon: Column
  38. val familyInfo: Column
  39. val familyVariantWindow: WindowSpec
  40. val fatherAffectedStatus: Column
  41. val fatherCalls: Column
  42. val fatherGQ: Column
  43. val feature_type: Column
  44. val firstAnn: Column
  45. val firstCsq: Column
  46. val formatted_consequence: (Column) ⇒ Column
  47. val formatted_consequences: Column
  48. final def getClass(): Class[_]
    Definition Classes
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    Annotations
    @native() @HotSpotIntrinsicCandidate()
  49. val has_alt: Column

    has_alt return 1 if there is at least one alternative allele.

    has_alt return 1 if there is at least one alternative allele. Note : It cannot returned a boolean beacause it's used to partition data. It looks like Glue does not support partition by boolean

  50. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  51. val heterozygotes: Column
  52. val hgvsc: Column
  53. val hgvsg: Column
  54. val hgvsp: Column
  55. val homozygotes: Column
  56. val impact: Column
  57. val intron: Column
  58. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  59. val is_multi_allelic: Column
  60. val is_normalized: Column
  61. val locus: List[Column]
  62. val locusColumNames: List[String]
  63. val motherAffectedStatus: Column
  64. val motherCalls: Column
  65. val motherGQ: Column
  66. val name: Column
  67. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  68. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  69. final def notifyAll(): Unit
    Definition Classes
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    Annotations
    @native() @HotSpotIntrinsicCandidate()
  70. val old_multi_allelic: Column
  71. def optional_info(df: DataFrame, colName: String, alias: String, colType: String = "string"): Column
  72. val original_canonical: Column
  73. val pick: Column
  74. val protein_position: Column
  75. val pubmed: Column
  76. val reference: Column
  77. val sas_af: Column
  78. val sortChromosome: Column
  79. val start: Column
  80. val strand: Column
  81. val symbol: Column
  82. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
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  83. def toString(): String
    Definition Classes
    AnyRef → Any
  84. val variant_class: Column
  85. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
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    Annotations
    @throws( ... )
  86. final def wait(arg0: Long): Unit
    Definition Classes
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    Annotations
    @throws( ... ) @native()
  87. final def wait(): Unit
    Definition Classes
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    Annotations
    @throws( ... )
  88. val zygosity: (Column) ⇒ Column

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
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    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

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